WeFold_CASP12

The wfRosetta-ProQ-ModF6 Branch

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Selection of Rosetta decoys using ProQ2 and the ModFOLD6 server L.J. McGuffin and A.H.A. Maghrabi, School of Biological Sciences, University of Reading, Reading, UK, D.E. Kim and D. Baker, Dept. of Biochemistry, University of Washington, USA, B. Wallner, Division of Bioinformatics, Department of Physics, Chemistry, and Biology, Linköping University, Sweden, S.N. Crivelli, Computational Research Division, Lawrence Berkeley National Laboratory, USA l.j.mcguffin@reading.ac.uk WeFold is an open collaboration initiative for protein structure prediction within CASP. It brings together labs and individuals through the science gateway http://wefold.nersc.gov/ and provides computing and storage resources…read more

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The wfRosetta-Wallner Branch

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WeFold – the wfRosetta-Wallner branch B. Wallner, Division of Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, 581 83 Linköping, Sweden D. E. Kim, Institute for Protein Design, University of Washington, Seattle, Washington, USA S. Crivelli, Lawrence Berkeley National Laboratory, Berkeley, USA bjornw@ifm.liu.se WeFold is an open collaboration initiative for protein structure prediction within CASP. It brings together labs and individuals through the science gateway http://wefold.nersc.gov/ and provides computing and storage resources through the National Energy Research Scientific Computing (NERSC) center. WeFold enables the interaction among groups that work…read more

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The WeFold Branches

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Here is the list of WeFold groups: 1. #182 wfCPUNK (Floudas-Gdansk-Scheraga) 2. #300 wf-BAKER-UNRES (Baker-Gdansk-Scheraga) 3. #239 wfAll-Cheng (WeFold mix-Cheng) 4. #173 wfRosetta-ProQ-MESHI (Bakerlab-Wallner-Keasar) 5. #441 wfRstta-PQ-MESHI-MSC (Bakerlab-Wallner-Keasar-Mirzaei) 6. #456 wfRosetta-Wallner (Bakerlab-Wallner) 7. #252 wfRosetta-ProQ-ModF6 (Bakerlab-Wallner-McGuffin) 8. #475 wfDB_BW_SVGroup (Bakerlab-Wallner-SVLab) 9. #325 wfRosetta-MUfold (Bakerlab-Wallner-Xu) 10. #303 wfMESHI-TIGRESS (Keasar-Floudas) 11. #384 wfMESHI-Seok (Keasar-Seok) 12. #041 wf-PSPM-MSC (RuizBlanco)

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Welcome to WeFold!

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Welcome to WeFold, CASP12 edition! Here are some notes to help you use the WeFold gateway. There are 2 ways to upload files: If you want to upload a file, then click on the avatar next to your user name on the top right corner and then select “BuddyDrive”. Select “BuddyDrive Files”. Click on the first icon on the left (a file with a “+” on it). This will allow you to name your file, define your sharing options, and then upload the file. The most commonly used sharing option…read more

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